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Posters and Presentations

Available posters and presentations highlighting research projects


Additional proteomics related posters and presentations from PNNL can be found on the omics.pnl.gov website


ASMS 2010 Posters and Oral Presentations

Agrawal - Microfluidic nanoESI-MS Platform for Single Cells Towards a Microfluidic nanoESI-MS Platform for Sample Preparation and Analysis of Single Cells
Nitin Agrawal, R Kelly, X Sun, K Tang, and RD Smith.
Angel - Proteome analysis of cerebrospinal fluid Proteome analysis of cerebrospinal fluid: Cross sectional and longitudinal analysis of HIV infected patients (slides from oral presentation)
Thomas Angel, JM Jacobs, R Price, S Spudich, M Gritsenko, D Fuchs, L Rosengren, H Zetterberg, DG Camp II, and RD Smith.
Aryal - Protein Abundance Dynamics in Cyanothece Protein abundance dynamics in the unicellular cyanobacterium Cyanothece ATCC 51142 during light-dark cycle
Uma K. Aryal, JM Jacobs, J Stöckel, CD Nicora, HB Pakrasi, DW Koppenaal, LA Sherman, and RD Smith.
Baker - High-Throughput Proteomics Platform for Biomarker Discovery High-Throughput Proteomics Platform and Software for Improved Biomarker Discovery
Erin S. Baker, YM Ibrahim, DC Prior, WF Danielson III, KK Weitz, AR Shah, GW Slysz, BL LaMarche, KL Crowell, JR Stanley, GA Anderson, JI Shutthanandan, RD Smith, and ME Belov.
Belov - Pulsed Multiple Reaction Monitoring for Biomolecule Quantitation Pulsed Multiple Reaction Monitoring Mode: The Novel Sensitive Approach for Biomolecule Quantitation
Mikhail E. Belov, S Prasad, DC Prior, WF Danielson III, KK Weitz, VA Petyuk, YM Ibrahim, and RD Smith.
Brown - Macaque Pulmonary Proteome Response to Highly Avian Influenza and Spanish Flu Influenza Dynamic evolution of the macaque pulmonary proteome response to highly pathogenic avian influenza and Spanish Flu influenza infections (slides from oral presentation)
Joseph Brown, R Palermo, JM Jacobs, M Gritsenko, M Katze, and RD Smith.
Clauss - Improving LC-MS Throughput for Phosphoproteomics Improving LC-MS throughput for phosphoproteomics research
Therese W. Clauss, RJ Moore, M Gritsenko, Y Wang, R Zhao, SO Purvine, WB Chrisler, A Shukla, ME Monroe, F Yang, and RD Smith.
Dixon - Nano-Electrospray Ionization Sources Nano-Electrospray Ionization Sources Operating at Atmospheric and Sub-Atmospheric Pressure (slides from oral presentation)
R. Brent Dixon, JS Page, I Marginean, N Agrawal, RT Kelly, K Tang, and RD Smith.
Hixson - High Pressure-Assisted Digestion in Proteomics New Strategies for High Pressure-Assisted Digestion in Proteomics
Kim K. Hixson, D López-Ferrer, KK Weitz, RJ Moore, SR Kronewitter, HH Smallwood, ME Belov, and RD Smith.
Ibrahim - nanoLC-IMS-TOF Platform for Quantitative Proteomics Evaluation of a nanoLC-IMS-TOF Platform for Broad and Sensitive Quantitative Proteomics Measurements
Yehia M. Ibrahim, ES Baker, WF Danielson III, DC Prior, RD Smith and ME Belov.
Kim - Targeted Quantitative Proteomics Using Selected Reaction Monitoring Targeted Quantitative Proteomics Using Selected Reaction Monitoring (SRM)- Mass Spectrometry Coupled with an 18O-labeled Reference as Internal Standards
Jong-Seo Kim, E Robinson, BL Champion, BO Petritis, TL Fillmore, RJ Moore, T Liu, DG Camp II, RD Smith, and WJ Qian.
Kurulugama - Orthogonal Ion Injection Method Coupled to a Dual Ion Funnel Source Development of a new orthogonal ion injection method coupled to dual ion funnel source for highly sensitive and high-throughput MS analysis
Ruwan T. Kurulugama, RD Smith, and ME Belov.
LaMarche - A Mathematical Approach For Reference Selection in Proteomics A mathematical approach for reference selection in high throughput proteomics
Brian L. LaMarche, SJ Callister, AR Shah, AT Wright, MJ Wilkins, ME Monroe, K Crowell, GA Anderson, and RD Smith.
López-Ferrer - High Pressure Trypsin Aggregate Coating on Superparamagnetic Magnetite/Silica Nanoparticles Application of High Pressure and Highly Stable Trypsin Aggregate Coating on Superparamagnetic Magnetite/Silica Nanoparticles for High Performance Proteomics
Daniel López-Ferrer, B Lee, J Kim, and RD Smith.
Marginean - Ion Source Efficiency In ESI-MS Achieving ~50% ion source efficiency in ESI-MS
Ioan Marginean, JS Page, AV Tolmachev, K Tang, and RD Smith.
Petyuk - DtaRefinery Software Tool for Eliminating Parent Ion Mass errorsin Tandem MS DtaRefinery: A Software Tool for Eliminating Systematic Errors from Parent Ion Mass Measurements in Tandem Mass Spectra Datasets
Vladislav A. Petyuk, AM Mayampurath, ME Monroe, AD Polpitiya, SO Purvine, GA Anderson, DG Camp II, and RD Smith.
Prasad - Interfacing an Ion Funnel Trap (IFT) to a Triple Quadrupole Analyzer Interfacing an Ion Funnel Trap (IFT) to a Triple Quadrupole Analyzer for Enhancing Sensitivity in Multiple Reaction Monitoring (MRM) Analyses
Satendra Prasad, DC Prior, WF Danielson III, KK Weitz, YM Ibrahim, RD Smith, and ME Belov.
Qian - Temporal Proteome Response To Severe Traumatic Injury In Human Leukocytes The temporal proteome response to severe traumatic injury in human leukocytes revealed by large-scale quantitative clinical proteomics using an 18O-labeled reference
Wei-Jun Qian, CN Nicora, BO Petritis, AA Schepmoes, RJ Moore, ME Monroe, LL Moldawer, RV Maier, RG Tompkins, DG Camp, and RD Smith.
Robinson - Multi-Capillary Inlet/tandem Electrodynamic Ion Funnel Interface High sensitivity LC-ESI-SRM MS analysis using multi-capillary inlet/tandem electrodynamic ion funnel interface
Errol W. Robinson, L Tang, T Liu, A Mordehai, A Fandino, E Aisawa, and RD Smith.
Shah - Next Generation Data Exchange Format for MS Next generation data exchange format for mass spectrometry
Anuj R. Shah, ME Monroe, Y Shi, B LaMarche, K Crowell, GS Slysz, GA Anderson, and RD Smith.
Shvartsburg - Differential Ion Mobility Spectrometry (FAIMS) for Lipid and Peptide Analyses Differential Ion Mobility Spectrometry (FAIMS) with Resolving Power up to 300 and its Application to Lipid and Peptide Analyses
Alexandre A. Shvartsburg, GI Mezengie, WF Danielson, DC Prior, K Tang, TO Metz, RD Smith, N Leveque.
Slysz - DeconTools Framework for Proteomics and Metabolomics The DeconTools Framework: an Application Programming Interface Enabling Flexibility in Accurate Mass and Time Tag Workflows for Proteomics and Metabolomics
Gordon W. Slysz, ES Baker, AR Shah, N Jaitly, GA Anderson, and RD Smith.
Taverner - Improved Normalization and Discovery in Label-Free Lc-Ms Proteomics Improved normalization and discovery in label-free LC-MS proteomics
Tom Taverner, AR Dabney, SO Purvine, GA Anderson, MS Lipton, and RD Smith.
Tian - Top-down Characterization of Histones using Online 2D Nano LC Top-down Characterization of Core Histones using an Online 2D Nanocapillary LC System
Zhixin Tian, Rui Zhao, N Tolić, RJ Moore, DL Stenoien, EW Robinson, RD Smith, L Paša-Tolić.
Tolmachev - Modeling the Ion Funnel Trap for Ion Mobility Spectrometry Modeling the Ion Funnel Trap for Ion Mobility Spectrometry
Aleksey V. Tolmachev, Y Ibrahim, RD Smith, and ME Belov.
Weitz - Development Of An Atmospheric Monitoring Mass Spectrometer Development of an atmospheric monitoring mass spectrometer for universal real-time applications
Karl K. Weitz, RJ Moore, KK Hixson, D López-Ferrer, TW Clauss, CM Taylor, and RD Smith.
Xie - Analysis Of The Euplotes Genome Using Proteomics Analysis of the Euplotes genome using proteomics approaches
Fang Xie, AV Petyuk, AV Lobanov, AA Turanov, LA Klobutcher, HM Brewer, MA Gritsenko, RJ Moore, DG Camp II, VN Gladyshev, and RD Smith.
Zhang - Quantitatively Probing Cellular Membrane Proteome Dynamics Quantitatively Probing Cellular Membrane Proteome Dynamics Using Membrane-Impermeable Chemical Probes and Proteomics Analysis (slides from oral presentation)
Haizhen Zhang , WJ Qian, T Liu, RN Brown, ME Monroe, SO Purvine, RJ Moore, L Shi, MF Romine, JK Fredrickson, J Shutthanandan, WB Chrisler, SH Wiley, L Paša-Tolić, RD Smith, MS Lipton.
Xu - Candidate Biomarkers of Systemic Chronic Inflammatory and Oxidative Stress Extensive Oxidative Protein Modifications Observed in Human Plasma and Candidate Biomarkers of Systemic Chronic Inflammatory and Oxidative Stress
Xu Zhang, MA Gritsenko, ME Monroe, RJ Moore, DG Camp II, DJ Bigelow, Wei-Jun Qian, JM Jacobs, JG Pounds, and RD Smith.
Zhou - Identification Of Growth Factors In Mouse Plasma Identification of growth factors in mouse plasma by immunoaffinity depletion, low molecular weight protein enrichment and LC-MS/MS analysis
Jian-Ying Zhou, JI Shutthanandan, BO Petritis, KK Weitz, RJ Moore, DG Camp II, RN Kulkarni, RD Smith, and WJ Qian.

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