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Journal Publications by year


Acknowledgments

All publications that result from utilization of the Resource must acknowledge NCRR grant support. Please include the following acknowledgment statement:

Portions of this research were supported by the NIH National Center for Research Resources (RR18522), and the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory). Pacific Northwest National Laboratory is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RLO-1830.

2005 Journal Publications

Adkins JN, ME Monroe, KJ Auberry, Y Shen, JM Jacobs, DG Camp II, F Vitzthum, KD Rodland, RC Zangar, RD Smith, and JG Pounds. 2005. "A Proteomic Study of HUPO Plasma Proteome Project's Pilot Samples Using an Accurate Mass and Time Tag Strategy." Proteomics 5:3454-3466.
PMCID: PMC2041806 - Abstract

Bogdanov B and RD Smith. 2005. "Proteomics by FTICR Mass Spectrometry: Top Down and Bottom Up." Mass Spectrometry Reviews 24(2):168-200.
Abstract on PubMed

Huang Y, JM Triscari, GC Tseng, L Pasa-Tolic, MS Lipton, RD Smith, and VH Wysocki. 2005. "Statistical Characterization of the Charge State and Residue Dependence of Low-Energy CID Peptide Dissociation Patterns." Analytical Chemistry 77(18):5800-5812.

Hulme JT, K Konoki, T. W-C Lin, MA Gritsenko, DG Camp II, DJ Bigelow, and WA Catterall. 2005. "Sites of Proteolytic Processing and Noncovalent Association of the Distal C-terminal Domain of Cav1.1 Channels in Skeletal Muscle." Proceedings of the National Academy of Sciences USA 102(14):5274-5279.
PMCID: PMC555994

Jacobs JM, X Yang, BJ Luft, JJ Dunn, DG Camp II, and RD Smith. 2005. "Proteomic Analysis of Lyme Disease: Global Protein Comparison of Three Strains of Borrelia burgdorferi." Proteomics 5(5):1446-1453.
Download the supplemental data corresponding to this article - 1 Excel file (1.7 MB) (registration required).

Jacobs JM, ME Monroe, W-J Qian, Y Shen, GA Anderson, and RD Smith. 2005. "Ultra-Sensitive, High Throughput and Quantitative Proteomics Measurements." International Journal of Mass Spectrometry 240(3):195-212.

Jacobs JM, JN Adkins, W-J Qian, T Liu, Y Shen, DG Camp II, and RD Smith. 2005. "Utilizing Human Blood Plasma for Proteomic Biomarker Discovery." Journal of Proteome Research 4(4):1073-1085.
Abstract on PubMed

Jacobs JM, DL Diamond, EY Chan, MA Gritsenko, W Qian, M Stastna, T Baas, DG Camp II, RL Carithers, Jr., RD Smith, and MG Katze. 2005. "Proteome Analysis of Liver Cells Expressing a Full-length Hepatitis C Virus (HCV) Replicon and Biopsy Specimens of Posttransplantation Liver from HCV-Infected Patients." Journal of Virology 79(12):7558-7569.
Download the supplemental data corresponding to this article - 1 Excel file (845 KB) (registration required).

Liu T, W-J. Qian, MA Gritsenko, DG Camp II, ME Monroe, RJ Moore, and RD Smith. 2005. "Human Plasma N-Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry." Journal of Proteome Research 4(6):2070-2080.
PMCID: PMC1850943 - Abstract

Liu T, W-J Qian, W-NU Chen, JM Jacobs, RJ Moore, DJ Anderson, MA Gritsenko, ME Monroe, BD Thrall, DG Camp and RD Smith. 2005. "Improved Proteome Coverage by Using High Efficiency Cysteinyl Peptide Enrichment: The Human Mammary Epithelial Cell Proteome." Proteomics 5(5):1263-1273.
PMCID: PMC1769322 - Abstract

Luo Q, Y Shen, KK Hixson, R Zhao, F Yang, RJ Moore, HM Mottaz, and RD Smith. 2005. "Preparation of 20-um-i.d. Silica-Based Monolithic Columns and Their Performance for Proteomics Analyses." Analytical Chemistry 77(15):5028-5035.
Abstract on PubMed

Masselon C, L Pasa-Tolic, N Tolic, GA Anderson, B Bogdanov, AN Vilkov, Y Shen, R Zhao, W Qian, MS Lipton, DG Camp II and RD Smith. 2005. "Targeted Comparative Proteomics by Liquid Chromatography - Tandem Fourier Ion Cyclotron Resonance Mass Spectrometry." Analytical Chemistry 77(2):400-406.
PMCID: PMC1850942

Norbeck AD, ME Monroe, JN Adkins, and RD Smith. 2005. "The Utility of Accurate Mass and LC Elution Time Information in the Analysis of Complex Proteomes." Journal of the American Society for Mass Spectrometry 16(8):1239-1249.
Abstract on PubMed

Page JS, AV Tolmachev, K Tang, and RD Smith. 2005. "Variable Low-Mass Filtering using an Electrodynamic Ion Funnel." Journal of Mass Spectrometry 40(9):1215-1222.
Abstract on PubMed

Page JS, B Bogdanov, AN Vilkov, DC Prior, MA Buschbach, K Tang, and RD Smith. 2005. "Automatic Gain Control in Mass Spectrometry using a Jet Disrupter Electrode in an Electrodynamic Ion Funnel." Journal of the American Society for Mass Spectrometry 16(2):244-253.

Patwardhan AJ, EF Strittmatter, DG Camp II, RD Smith, and M Pallavicini. 2005. "Comparison of Normal and Breast Cancer Cell Lines Using Proteome, Genome, and Interactome Data." Journal of Proteome Research 4(6):1952-1960.
Abstract on PubMed

Qian, W-J, DG Camp II, and RD Smith. 2005. “High-Throughput Proteomics using Fourier Transform Ion Cyclotron Resonance (FTICR) Mass Spectrometry.” Expert Rev. Proteomics, 1, 87-95.

Qian W-J, T Liu, ME Monroe, EF Strittmatter, JM Jacobs, LJ Kangas, K Petritis, DG Camp II and RD Smith. 2005. "Probability-Based Evaluation of Peptide and Protein Identifications from Tandem Mass Spectrometry and SEQUEST Analysis: The Human Proteome." Journal of Proteome Research 4(1):53-62.
Abstract on PubMed

Qian W-J, JM Jacobs, DG Camp II, ME Monroe, RJ Moore, MA Gritsenko, SE Calvano, SF Lowry, W Xiao, LL Moldawer, RW Davis, RG Tompkins, and RD Smith. 2005. "Comparative Proteome Analyses of Human Plasma Following in vivo Lipopolysaccharide Administration Using Multidimensional Separations Coupled with Tandem Mass Spectrometry." Proteomics 5(2):572-584.
PMCID: PMC1781926 - Abstract

Qian W-J, ME Monroe, T Liu, JM Jacobs, GA Anderson, Y Shen, RJ Moore, DJ Anderson, R Zhang, SE Calvano, SF Lowry, W Xiao, LL Moldawer, RW Davis, RG Tompkins, DG Camp II, and RD Smith. 2005. "Quantitative Proteome Analysis of Human Plasma Following in vivo Lipopolysaccharide Administration using 16O/18O Labeling and the Accurate Mass and Time Tag Approach." Molecular and Cellular Proteomics 4(5):700-709.
PMCID: PMC1829297 - Abstract

Shen Y and RD Smith. 2005. "Advanced Nanoscale Separations and Mass Spectrometry for Sensitive High-Throughput Proteomics." Expert Review of Proteomics 2(3):431-447.
Abstract on PubMed

Shen Y, RD Smith, KK Unger, D Kumar and D Lubda. 2005. "Ultrahigh-Throughput Proteomics Using Fast RPLC Separations with ESI-MS/MS." Analytical Chemistry 77(20):6692-6701.
Abstract on PubMed

Shen Y, J Kim, EF Strittmatter, JM Jacobs, DG Camp II, R Fang, N Tolic, RJ Moore, and RD Smith. 2005. "Characterization of the Human Blood Plasma Proteome." Proteomics 5(15):4034-4045.

Shen Y, R Zhang, RJ Moore, J Kim, TO Metz, KK Hixson, R Zhao, EA Livesay, HR Udseth, and RD Smith. 2005. "Automated 20 Kpsi RPLC-MS and MS/MS with Chromatographic Peak Capacities of 1000-1500 and Capabilities in Proteomics and Metabolomics." Analytical Chemistry 77(10):3090-3100.
Abstract on PubMed

Shen Y, EF Strittmatter, R Zhang, TO Metz, RJ Moore, F Li, HR Udseth, RD Smith, KK Unger, D Kumar, and D Lubda. 2005. "Making Broad Proteome Protein Measurements in 1-5 min Using High-Speed RPLC Separations and High-Accuracy Mass Measurements." Analytical Chemistry 77(23):7763-7773.
Abstract on PubMed

Shvartsburg AA, K Tang, and RD Smith. 2005. "FAIMS Operation for Realistic Gas Flow Profile and Asymmetric Waveforms Including Electronic Noise and Ripple." Journal of the American Society for Mass Spectrometry 16(9):1447-1455.
Abstract on PubMed

Shvartsburg AA, K Tang, and RD Smith. 2005. "Optimization of the Design and Operation of FAIMS Analyzers." Journal of the American Society for Mass Spectrometry 16(1):2-12.
Abstract on PubMed

Simpson DC and RD Smith. 2005. "Combining Capillary Electrophoresis with Mass Spectrometry for Applications in Proteomics." Electrophoresis 26(7-8):1291-1305.
Abstract on PubMed

Tang K, F Li, AA Shvartsburg, EF Strittmatter, and RD Smith. 2005. "Two-Dimensional Gas-Phase Separations Coupled to Mass Spectrometry for Analyses of Complex Mixtures." Analytical Chemistry 77(19):6381-6388.
PMCID: PMC1829301 - Abstract

Tang K, AA Shvartsburg, H-N Lee, DC Prior, MA Buschbach, F Li, A Tolmachev, GA Anderson, and RD Smith. 2005. "High-Sensitivity Ion Mobility Spectrometry/Mass Spectrometry Using Electrodynamic Ion Funnel Interfaces." Analytical Chemistry 77(10):3330-3339.
PMCID: PMC1829302 - Abstract

Thrall BD, LE Kathmann, T Liu, RD Quesenberry, TJ Weber, JM Jacobs, RD Smith, B Gopalan, and HS Wiley. 2004. "Global Analysis of the Response of Human Mammary Epithelial Cells to Epidermal Growth Factor Stimulation." Molecular Biology of the Cell 15 (supplement) 13A, Abstract 65.

Wang HX, W Qian, HM Mottaz, T Clauss, DJ Anderson, RJ Moore, DG Camp II, AH Khan, DM Sforza, M Pallavicini, DJ Smith, and RD Smith. 2005. "Development and Evaluation of a Micro- and Nanoscale Proteomic Sample Preparation Method." Journal of Proteome Research 4(6):2397-2403.
PMCID: PMC1781925 - Abstract

Zhang H, EC Yi, X Li, P Mallick, KS Spratt, CD Masselon, DG Camp II, RD Smith, C Kemp, and R Aebersold. 2005. "High Throughput Quantitative Analysis of Serum Proteins using Glycopeptide Capture and Liquid Chromatography Mass Spectrometry." Molecular and Cellular Proteomics 4(2):144-155.
Abstract on PubMed

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