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Journal Publications by year


2019 Journal Publications

"Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Containminant Ions in Complex Samples" K.E. Burnum-Johnson, X. Zheng, J.N. Dodds, J. Ash, D. Fourches, C.D. Nocora, J.P. Wendler, T.O. Metz, K.M. Waters, J.K. Jansson, R.D. Smith, E.S. Baker. Trends Anayt Chem, 2019 July; 116:292-299. doi: 10.1016/j.trac.2019.04.022.
PMID: 31798197, PMCID: PMC6887105

"High-Throughput Single Cell Proteomics Enabled by Muliplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform", : M. Dou, G. Clair, C.F. Tsai, K. Xu, W.B. Chrisler, R.L. Sontag, R. Zhao, R.J. Moore, T. Liu, L. Pasa-Tolic, R.D. Smith, T. Shi, J.N. Adkins, W.J. Qian, R.T. Kelly, C. Ansong, Y. Zhu. Anal Chem, 2019 October 15; 91(20):13119-13127. doi: 10.1021/acs.analchem.9b03349
PMID: 31509397, PMCID: PMC7192326

"SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes", R. Wojcik, G. Nagy, I.K. Attah, I.K. Webb, S.V.B Garimella, K.K. Weitz, A. Hollerbach, M.E. Monroe, M.R. Ligare, F.F. Nielson, R.V. Norheim, R.S. Renslow, T.O. Metz, Y.M. Ibrahim, R.D. Smith. Anal Chem, 2019 September 17; 91(18):11952-11962. doi: 10.1021/acs.analchem.9b02808
PMID: 31450886, PMCID: PMC7188075

"Tandem Mass Tag Labeling Facilitates Reversed-Phase Liquid Chromatography-Mass Spectrometry Analysis of Hydrophilic Phosphopeptides" C.F. Tsai, J.S. Smith, K. Krajewski, R. Zhao, A.M. Moghieb, C.D. Nicora, X. Xiong, R.J. Moore, T. Liu, R.D. Smith, J.M. Jacobs, S. Rajagopal, T. Shi. Anal Chem, 2019 September 17; 91(18):11606-11613. doi:10.1021/acs.analchem.9b01814
PMID: 31418558, PMCID: PMC7197904

"Cognition may link cortical IGFBP5 levels with motor function in older adults", A.S. Buchman, L. Yu, V.A. Petyuk, C. Gaiteri, S. Tasaki, K.D. Blizinsky, J.A. Schneider, P.L. De Jager, D.A. Bennett. PLoS One, 2019; 14(8):e0220968. doi:10.1371/journal.pone.0220968
PMID: 31404102, PMCID: PMC6690580

"Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples", M. Dou, C.F. Tsai, P.D. Piehowski, Y. Wang, T.L. Fillmore, R. Zhao, R.J. Moore, P. Zhang, W.J. Qian, R.D. Smith, T. Liu, R.T. Kelly, T. Shi, Y. Zhu. Anal Chem, 2019 August 6; 91(15):9707-9715. doi: 10.1021/acs.analchem.9b01248
PMID: 31241912, PMCID: PMC6741344

"Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry", X. Zheng, F.B. Smith, N.A. Aly, J. Cai, R.D. Smith, A.D. Patterson, E.S. Baker. Anal Bioanal Chem, 2019 July; 411(19):4673-4682. doi: 10.1007/s00216-019-01869-0
PMID: 31098744, PMCID: PMC6612315

"A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification", A. Moghieb, L. Tesfay, S. Nie, M. Gritsenko, T.L. Fillmore, J.M. Jacobs, R.D. Smith, F.M. Torti, S.V. Torti, T. Shi, C. Ansong. Sci Rep, 2019 May 13; 9(1):7264. doi: 10.1038/s41598-019-43756-9
PMID: 31086210, PMCID: PMC6513854

"An Activity-Based Protein Profiling Investigation", E.G. Stoddard, B.J. Killinger, S.A. Nag, J. Martin, R. Corley, J.N. Smith, A.T. Wright. Chem Res Toxicol, 2019 June 17; 32(6):1259-1267. doi: 10.1021/acs.chemrestox.9b00069
PMID: 30938511, PMCID: PMC7138413

"Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells", L. Yi, C.F. Tsai, E. Dirice, A.C. Swensen, J. Chen, T. Shi, M.A. Gritsenko, R.K. Chu, P.D. Piehowski, R.D. Smith, K.D. Rodland, M.A. Atkinson, C.E. Mathews, R.N. Kulkarni, T. Liu, W.J. Qian. Anal Chem, 2019 May 7; 91(9):5794-5801. doi: 10.1021/acs.analchem.9b00024
PMID: 30843680, PMCID: PMC6596310

"Glomerular filtrate proteins in acute cardiorenal syndrome", R. Wakasaki, K. Matsushita, K. Golgotiu, S. Anderson, M.B. Eiwaz, D.J. Orton, S.J. Han, H.T. Lee, R.D. Smith, K.D. Rodland, P.D. Piehowski, M.P. Hutchens. JCI Insight, 2019 February 21; 4(4). doi: 10.1172/jci.insight.122130
PMID: 30829647, PMCID: PMC6478405

"Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells", P. Zhang, M.J. Gaffrey, Y. Zhu, W.B. Chrisler, T.L. Fillmore, L. Yi, C.D. Nicora, T. Zhang, H. Wu, J. Jacobs, K. Tang, J. Kagan, S. Srivastava, K.D. Rodland, W.J. Qian, R.D. Smith, T Liu, H.S. Wiley, T. Shi. Anal Chem, 2019 January 15; 91(2):1441-1451. doi: 10.1021/acs.analchem.8b04258
PMID: 30557009, PMCID: PMC6555634

"A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome", C. Whidbey, N.C. Sadler, R.N. Nair, R.F. Volk, A.J. DeLeon, L.M. Bramer, S.J. Fansler, J.R. Hansen, A.K. Shukla, J.K. Jansson, B.D. Thrall, A.T. Wright. J Am Chem Soc, 2019 January 9; 141(1):42-47. doi: 10.1021/jacs.8b09668
PMID: 30541282, PMCID: PMC6533105

"Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations", G. Nagy, D. Veličković, R.K. Chu, A.A. Carrell, D.J. Weston, Y.M. Ibrahim, C.R. Anderton, R.D. Smith. Chem Commun (Camb), 2019 January 2; 55(3):306-309. doi: 10.1039/c8cc07482h
PMID: 30534702, PMCID: PMC6537888

"Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards", B.C. Gibbons, T.L. Fillmore, Y. Gao, R.J. Moore, T. Liu, E.S. Nakayasu, T.O. Metz, S.H. Payne. Journal Proteome Res, 2019 February 1; 18(2):694-699. doi: 10.1021/acs.jproteome.8b00688
PMID: 30525668, PMCID: PMC6537873

"Traveling-wave-based electrodynamic switch for concurrent dual-polarity ion manipulations in Structures for Lossless Ion Manipulations", I.K. Attah, G. Nagy, V. Garimella, R.V. Norheim, G.A. Anderson, Y.M. Ibrahim, and R.D. Smith. Analytical Chemistry, 2019 November 19; 91(22):14712-14718. doi:10.1021/acs.analchem.9b03987
PMID 31621288, NIHMS ID: NIHMS1587209

"Tandem Mass Tag Labeling Facilitates Reversed-Phase Liquid Chromatography-Mass Spectrometry Analysis of Hydrophilic Phosphopeptides", C. Tsai, J.S. Smith, K. Krajewski, R. Zhao, A.M. Moghieb, C.D. Nicora, X. Xiong, R.J. Moore, T. Lui, R.D. Smith, J.M. Jacobs, S. Rajagopal, T. Shi. Analytical Chemistry, 2019 September 17; 91(18):11606-11613. doi: 10.1021/acs.analchem.9b01814
PMID: 31418558, PMCID: PMC7197904

"Architecture and Subunit Arrangement of Native AMPA Receptors Elucidated by cryo-EM" Yan Zhao, Shanshuang Chen, Adam C Swensen, Wei-Jun Qian, Eric Gouaux Science (New York, N.Y.), 2019 Apr 26; 364(6438):355-362. doi: 10.1126/science.aaw8250
PMID: 30975770, PMCID: PMC6701862

"Proteomic studies of bone and skeletal health outcomes", C. Nielson, J.M. Jacobs, E.S. Orwoll. Bone, 2019 September; 126:18-26. doi: 10.1016/j.bone.2019.03.032
PMID: 30954730, NIHMSID: 1529098

"Boosting to Amplify Signal With Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells" Yi L, Tsai CF, Dirice E, Swensen AC, Chen J, Shi T, Gritsenko MA, Chu RK, Piehowski PD, Smith RD, Rodland KD, Atkinson MA, Mathews CE, Kulkarni RN, Liu T, Qian WJ. Analytical chemistry, 2019 May 7; 91(9):5794-5801. doi: 10.1021/acs.analchem.9b00024
PMID: 30843680, PMCID: PMC6596310

"Benzo[ A]pyrene Induction of Glutathione S-Transferases: An Activity-Based Protein Profiling Investigation" Stoddard EG, Killinger BJ, Nag SA, Martin J, Corley R, Smith JN, Wright AT. Chemical research in toxicology, 2019 Jun 17; 32(6):1259-1267. doi: 10.1021/acs.chemrestox.9b00069
PMID: 30938511, PMCID: PMC7138413

"Separation of β-Amyloid Tryptic Peptide Species with Isomerized and Racemized l-Aspartic Residues with Ion Mobility in Structures for Lossless Ion Manipulations," G. Nagy, K. Kedia, I. K. Attah, S. V. B. Garimella, Y. M. Ibrahim, V. A. Petyuk, R. D. Smith. Analytical Chemistry, 2019 April 2; 91(7):4374-4380. doi: 10.1021/acs.analchem.8b04696
PMID: 30816701, PMCID: PMC6596305

"Dual Polarity Ion Confinement and Mobility Separations," I. K. Attah, S. V. B. Garimella, I.K. Webb, G. Nagy, R. V. Norheim, C. E. Schimelfenig, Y. M. Ibrahim, R. D. Smith. Journal of American Society of Mass Spectrometry, 2019 June; 30(6):967-976. doi: 10.1007/s13361-019-02138-1
PMID: 30834510, PMCID: PMC6520127

"Plasma lipidome reveals critical illness and recovery from human Ebola virus disease," J. E. Kyle, K. E. Burnum-Johnson, J. P. Wendler, A. J. Eisfeld, P. J. Halfmann, T. Watanabe, F. Sahr, R. D. Smith, Y. Kawaoka, K. M. Waters, T. O. Metz. Proc Natl Acad Sci USA, 2019 Feb 26; 116(9):3919-3928. doi: 10.1073/pnas.1815356116
PMID: 30808769, PMCID: PMC6397561

"Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards," B. C. Gibbons, T. L. Fillmore, Y. Gao, R. J. Moore, T. Liu, E. S. Nakayasu, T. O. Metz, S. H. Payne. J Proteome Res, 2019 Feb 1; 18(2):694-699. doi: 10.1021/acs.jproteome.8b00688
PMID: 30525668

"Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations," G. Nagy, D. Velickovic, R. K. Chu, A. A. Carrell, D. J. Weston, Y. M. Ibrahim, C. R. Anderton, R. D. Smith. Chemical communications (Cambridge, England), 2019 Jan 2; 55(3):306-309. doi: 10.1039/c8cc07482h
PMID: 30534702

"Legionella pneumophila inhibits immune signalling via MavC-mediated transglutaminase-induced ubiquitination of UBE2N," N. Gan, E. S. Nakayasu, R. J. Hollenbeck, Z. Q. Lou. Nature microbiology, 2019 Jan;4 (1):134-143. doi: 10.1038/s41564-018-0282-8
PMID: 30420781, PMCID: PMC6294664

"Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic," X. Zheng, K. T. Dupuis, N. A. Aly, Y. Zhou, F. B. Smith, K. Tang, R. D. Smith, E. S. Baker. Analytica Chimica Acta, 2018 Dec 11; 1037:265-273. doi: 10.1016/j.aca.2018.02.054
PMID: 30292301, PMCID: PMC6223027

Acknowledgments

All publications that result from utilization of the Resource must acknowledge NIGMS grant support. Please include the following acknowledgment statement:

Portions of this research were supported by the NIH National Institute of General Medical Sciences (GM103493), and the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory). Pacific Northwest National Laboratory is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RLO-1830.

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