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2020 Journal Publications

"Metabolite, Protein, and Lipid Extraction (MPLEx): A Method that Simultaneously Inactivates Middle East Respiratory Syndromedete Coronavirus and Allows Analysis of Multiple Host Cell Components Following Infection", C.D. Nicora, A.C. Sims, K.J. Bloodsworth, Y.M. Kim, R.J. Moore, J.E. Kyle, E.S. Nakayasu, T.O. Metz. Methods Mol Biology(Clifton, N.J.), 2020; 2099:173-194. doi: 10.1007/978-1-0716-0211-9_14
PMID: 31883096, PMCID:PMC7121680

"A proteome-wide assessment of the oxidative stress paradigm for metal and metal-oxide nanomaterials in human macrophages." T.Zhang, M.J. Gaffrey, D.G. Thomas, B.M. Hess, K.K. Weitz, P.D. Piehowski, V.A. Petyuk, R.J. Moore, W.J. Qian, B.D. Thrall. Nano Impact, 2020 Jan; 17:10.1016/j.impact.2019.100194. doi: 10.1016/j.impact.2019.100194
PMID: 32133426, PMCID:PMC7055704

"Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics", K.J. Adams, B. Pratt, N. Bose, L.G. Dubois, L. St John-Williams, K.M. Perrott, K. Ky, P. Kapahi, V. Sharma, M.J. MacCoss, M.A. Moseley, C.A. Colton, B.X. MacLean, B. Schilling, J.W. Thompson. J Proteome, 2020 April 3; 19(4):1447-1458. doi: 10.1021/acs.jproteome.9b00640
PMID: 31984744, PMCID:PMC7127945

"Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-search Delta Score Strategy" X. Wang, A.C. Swensen, T. Zhang, P.D. Piehowski, M.J. Gaffrey, M.E. Monroe, and Y. Zhu. Journal of Proteome Research, 2020 April 3; 19(4):1863-1872.doi:10.1021/acs.jproteome.9b00766
PMID: 32175737, PMCID:PMC7217331

"Picoflow Liquid Chromatography-Mass Spectrometry for Ultrasensitive Bottom-Up Proteomics Using 2-μm-i.d. Open Tubular Columns", P. Xiang, Y. Zhu, Y. Yang, Z. Zhao, S.M. Williams, R.J. Moore, R.T. Kelly, R.D. Smith, S. Liu. Anal Chem, 2020 April 7; 92(7):4711-4715. doi: 10.1021/acs.analchem.9b05639
PMID: 32208662, NIHMS ID: NIHMS 1594702

"An improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) strategy for precise quantitative single-cell proteomics", C. Tsai, R. Zhao, R.J. Moore, S.M. Williams, K.D. Schultz, L. Pasa Tolic, K.D. Rodland, R.D. Smith, T. Shi, Y. Zhu, T. Liu. Journal of Molecular and Cellular Proteomics, 2020 May; 19(5):828-838. doi: 10.1074/mcp.RA119.001857
PMID: 32127492, PMCID:PMC7196584

"Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability", Jason E. McDermott, Osama A. Arshad, Vladislav A. Petyuk, Yi Fu, Marina A. Gritsenko, Therese R. Clauss, Ronald J. Moore, Athena A. Schepmoes, Rui Zhao, Matthew E. Monroe, Michael Schnaubelt, Chia-Feng Tsai, Samuel H. Payne, Chen Huang, Liang-Bo Wang, Steven Foltz, Matthew Wyczalkowski, Yige Wu, , Ehwang Song, Molly A. Brewer, Mathangi Thiagarajan, Christopher R. Kinsinger, Ana I. Robles, Emily S. Boja, Henry Rodriguez, Daniel W. Chan, Bing Zhang, Zhen Zhang, Li Ding, Richard D. Smith, Tao Liu, Karin D. Rodland, the Clinical Proteomic Tumor Analysis Consortium Investigators. Cell Reports Medicine, 2020 April 21. doi: 10.1016/j.xcrm.2020.100004
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Acknowledgments

All publications that result from utilization of the Resource must acknowledge NIGMS grant support. Please include the following acknowledgment statement:

Portions of this research were supported by the NIH National Institute of General Medical Sciences (GM103493), and the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory). Pacific Northwest National Laboratory is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RLO-1830.

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